How can this be done with jQuery?

Let’s start with the first case, swapping adjunct divs.

<div class="element" id="e0">...</div>
<div class="element" id="e1">...</div>
<div class="element" id="e2">...</div>
<div class="element" id="e3">...</div>
<div class="element" id="e4">...</div>

// get a handle on the elements
var elements = $(".elements");
 
// let's assume, we want to swap #e2 and #e3
var leftElement = $(elements[2]);
var rightElement = $(elements[3]);
 
leftElement.insertAfter(rightElement); // inserts leftElement after rightElement

insertAfter takes the object, with with the method is associated (leftElement) and inserts the object’s div after the div specified as a method argument. Here’s more on SO about it.

In a previous version of the code, i mistakenly though, that it’s necessary to replace the leftElement with the right one prior to inserting…

// NG
leftElement.replaceWith(rightElement);
leftElement.insertAfter(rightElement);

This also seemed to work ok. Only later I found out, that any jQuery data() objects connected to the rightElement will get wiped when replaceWith is being called.

Finally you’ll also want to do an update to the elements array, to get them in their new order:

var elements = $(".elements");

var myArray = ["a", "c", "b"];
myArray.swap(1, 2);
console.log(myArray);
// ["a", "b", "c"];
 
Array.prototype.swap=function(a, b) {
    this[a]= this.splice(b, 1, this[a])[0];
    return this;
}

It could also be done with a temp var, but this solution seems to be the most elegant. The key to this is in the additional arguments the splice() function can accept.

splice(start, itemCount, additionalItems ...)

splice() removes elements denominated by the start and itemCount argument, and – if specified – inserts additional items at the same position.

Also important to note is that splice() returns an array. And to turn that array into an item again we need to select it directly with [0].

<div class="myClass">One Title</div>
<div class="myClass">Another Title</div>
<div class="myClass">Brrrr</div>
<div class="myClass">Zzzzzz</div>

And you want to get a particular element from this list.

var myArray = $(".myClass");
var thirdElement = myArray[2];
console.log(thirdElement);
// <div class="myClass">Brrrr</div>

But note, that myArray[2] is the HTML element, not an jQuery object. If you want to access it via jQuery, you’ll have to “arm” it…

var myArray = $(".myClass");
var thirdElement = $(myArray[2]);
console.log(thirdElement);
// [<div class="myClass">Brrrr</div>]

Interrating over a jQuery selected list can be done with the each() function:

myArray.each(function(i, element){
	var myElement = myArray[i];
	// this
	// element
}

myElement, element and this would all hold the same value at each iteration. i is obviously the index counter.

It’s also described quite clearly at the jQuery Docs, but I think it’s important enough to reiterate.

var oneArray = ["a", "b", "c"];
var anotherArray = oneArray;
anotherArray[0] = "z";
 
console.log(oneArray, anotherArray);
// ["z", "b", "c"], ["z", "b", "c"]

Ok, but let’s say you’ll need to make a copy of the array. How do you do that?

var oneArray = ["a", "b", "c"];
var anotherArray = oneArray.slice(0);
anotherArray[0] = "z";
 
console.log(oneArray, anotherArray);
// ["a", "b", "c"], ["z", "b", "c"]

If you’d really, really want you could also wrap it into a prototype function. Although the code-characters savings are minimal.

Array.prototype.copy = function() {
	return this.slice(0);
}
 
var anotherArray = oneArray.slice(0);
//vs
var anotherArray = oneArray.copy();

Minimal, but maybe contextually for self-explaining.

Selecting “FX ApeosPort-IV C3370 v3017.104 PS” or similar driver did not produce a workable connection to the printer. Rather it produced some annoying ‘beep’ sounds at the printer every time I was trying to print. But it did not produce any print-outs.

Thanks to this I found that the solution is to select the following driver: “FX Print Drive for Mac OX v1.2.2″ (or whatever the latest version might be). It’s working!

Because its the native environment is bio-informaticians, the software is written in Perl. For those without Perl experience, it can be slightly frustrating to set it up on OSX (as it was for me). Here are the steps I needed to do to get it running, hope that this might reduce the trouble and let others get to work on their visualization more quickly.

The whole installation process is also detailed on the Installation page.

1 Getting Circos
Download the software, tutorials, tools and courses

2 Testing the modules
Go the the circosX-XX/bin folder and run: ./test.modules
This gives you a list of the installed Perl modules, and – more importantly – the ones still missing.

3 Install the missing modules
Switch to the super user with ‘su’.
For each missing modules say: cpan -i Modulename::Subname

cpan -i Config::General
cpan -i Graphics::ColorObject
cpan -i Math::VecStat
etc, etc

All worked swimmingly, except GD was making a bit of trouble.

4 Installing GD
The graphics library GD has to be present on your system. If it’s not, install it. (I am with homebrew, therefore installing GD is done like that: brew install gd)

Still after installing GD, installing the Perl module would not work. But after applying a little force, it went fine:

cpan -i -f GD

5 Adding circos to your path
Adding the circos ‘bin’ directory to your path lets you call the circos program directly without specifying the whole path. That’s a good thing.

PATH="/path/to/circos-0.55/bin:${PATH}"
export PATH

After that, everything should work and your Circos adventure can begin…

ctx.fillStyle = "666";		// text color
ctx.textAlign = "center";		// alignment
ctx.font = "normal 12px Helvetica Neue";		// font
ctx.fillText("my Text, x , y);		// draw

Sometimes, you might want to draw a border around the text. Getting the textHeight should not present a problem, after all we can set the font size directly. But textWidth is not fixed in that way, because it depends (nnnn) on the actual text that is being displayed.

ctx.measureText takes the text as an argument and returns an object with a width property, describing the width of the text.

var texttWidth = ctx.measureText(columnName).width;

width is for now the only inhabitant of that object, but it would be a fair guess, that it might be more densely populate in the future.

<div id="item" class="disabled">Open File...</div>

Next, we check in Javascript is this certain feature is supported. If it is, we replace the disabled element with an active version.

if (isSupported()) {
	$('#item').replaceWith('<a id="openFile">Open File...</a>');
}

Which results in this:

<a id="item">Open File...</a>

Simple, but effective.

The proper way to do it, would probably be to export a clean directory tree, but sometimes this option is not available.

Here’s a simple shell script to recursively remove all the hidden ‘.svn’ directories:

rm -rf `find . -type d -name .svn`

Wether it is better to use backticks or xargs is being discussed elsewhere.

So far so good.

As in Javascript Arrays also inherit from Object, I could see not reason, why freezing an array should not work.

var obj = {'a':1, 'b:2'};
Object.freeze(obj);
Object.isFrozen(obj);       // returns true
obj.a = 10;                 // new assignment has no affect
obj.a;                      // returns 1
 
var arr = [1, 2];
Object.freeze(arr);
Object.isFrozen(arr);      // returns true
arr[0] = 10;
arr;                       // returns [10, 2] ... ouch!

It turns out, that it seems to be an implementation bug in Safari (5.1). It’s working in the latest Firefox and Chrome releases.

To check whether freezing arrays works in your brower, click the following button:
Check the Freezer!

ps. I asked the question first on Stack Overflow: ‘Freezing’ Arrays in Javascript?. Thanks for the constructive answers.